PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.334870.1
Common NameCsa_4G192030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 186aa    MW: 20322.8 Da    PI: 8.6046
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.334870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-193685255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +grWvAeI+d      k+ r +lg+f taeeAa+a+++a+  l+g
  Cucsa.334870.1 36 KFVGVRQRP-SGRWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAACLLRG 85
                    899******.7*********33....36**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-193693IPR016177DNA-binding domain
SMARTSM003801.3E-353699IPR001471AP2/ERF domain
PROSITE profilePS5103219.7573693IPR001471AP2/ERF domain
PfamPF008471.7E-133685IPR001471AP2/ERF domain
CDDcd000188.63E-323692No hitNo description
Gene3DG3DSA:3.30.730.102.2E-283692IPR001471AP2/ERF domain
PRINTSPR003675.1E-83748IPR001471AP2/ERF domain
PRINTSPR003675.1E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEIDFQSPEI HRGATASIIK STKFKGRNRS NNNGNKFVGV RQRPSGRWVA EIKDTTKKIR  60
MWLGTFETAE EAARAYDEAA CLLRGSNTRT NFIPQISTNS PIASRIRSLL NTKKTVNRKP  120
PEKPTTSAAV SAGSAVVDPS IKDDGLFEGA YKPDMTNCLE EREVSSCDSC CSESCELGVS  180
LAENGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-153498368ATERF1
2gcc_A1e-153498368ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818820.0LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149126.11e-135PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0A0L1B81e-136A0A0A0L1B8_CUCSA; Uncharacterized protein
STRINGVIT_08s0007g07250.t014e-64(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-26related to AP2 11
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]